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№1 слайд![Moscow Digital Herbarium and](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img0.jpg)
Содержание слайда: Moscow Digital Herbarium and the National Depository Bank of Live Systems Initiative (Russia)
Dr Sci Alexey P. Seregin
Lomonosov Moscow State University
№2 слайд![Moscow University Herbarium](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img1.jpg)
Содержание слайда: Moscow University Herbarium (MW)
Founded ca. 1780
The second largest herbarium in Russia
Six staff members (science & technical)
Part of the National Depository Bank of Live Systems initiative (launched by the Moscow University)
No international loans due to custom regulations
№3 слайд![Specimen Total , , specimens](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img2.jpg)
Содержание слайда: Specimen Total
1,011,253 specimens (as of Nov 2016)
including:
924,167 vascular plants
77,086 bryophytes
ca. 10,000 lichens
Statistics update is available once a year.
№4 слайд![Specimen Ranking th in the](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img3.jpg)
Содержание слайда: Specimen Ranking
61th in the world
24th among university herbaria
2nd in Russia (after Komarov Institute)
№5 слайд![Collection Growth Mean annual](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img4.jpg)
Содержание слайда: Collection Growth
Mean annual increase in 2005-2016 was 15,100 specimens
In 2016, we added 22,013 specimens (expeditions, old collections, gifts, exchange, etc.)
№6 слайд![Taxonomic Outline , species](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img5.jpg)
Содержание слайда: Taxonomic Outline
39,323 species (excl. historic collections)
including:
37,100 vascular plants
2,223 bryophytes
Types of ca. 3,000 taxa are curated separately (4,620 specimens).
№7 слайд![Plant Taxonomy in the Moscow](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img6.jpg)
Содержание слайда: Plant Taxonomy in
the Moscow University
60 new species of vascular plants were described by the Moscow University staff members in 2012-2016:
Apiaceae: 15 species (M. Pimenov, E. Kljuykov, D. Lyskov et al.)
Amaranthaceae s. l.: 11 species (A. Sukhorukov)
Asparagaceae: 10 species (N. Vislobokov et al.)
Amaryllidaceae s. l.: 9 species (A. Seregin)
Apocynaceae: 2 species (Y. Alexeev)
Cucurbitaceae: 2 species (M. Nuraliev)
Polygonaceae: 2 species (O. Yurtseva)
Thismiaceae: 2 species (M. Nuraliev)
Molluginaceae: 2 species (A. Sukhorukov)
Asteraceae, Centrolepidaceae, Lophiocarpaceae, Orchidaceae, Triuridaceae: 1 species
№8 слайд![Geographical Scope Vascular](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img7.jpg)
Содержание слайда: Geographical Scope: Vascular Plants
№9 слайд![Moscow University Project](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img8.jpg)
Содержание слайда: Moscow University Project
Moscow University have received 750,000,000 RUR (ca. 10,910,000 Euro) for foundation of the National Depository Bank of Live Systems from Russian Science Foundation.
4-year project (2015-2018).
Five branches: 1) Plants; 2) Animals; 3) Fungi & Microbes; 4) Human Material; 5) Bioinformatics.
№10 слайд![Moscow University Project](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img9.jpg)
Содержание слайда: Moscow University Project: Plants
125,000,000 RUR (ca. 1,820,000 Euro) for plant studies (collections, new labs, expeditions, extra salary, etc.) in 2015-2018.
The largest grant in the history of Russian botany.
24% for the Moscow University Herbarium (MW) for digitisation, databasing and management.
№11 слайд![Digitisation as a World Trend](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img10.jpg)
Содержание слайда: Digitisation as a World Trend
№12 слайд![Equipment or Services?](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img11.jpg)
Содержание слайда: Equipment or Services?
№13 слайд![Herbarium Budget in -](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img12.jpg)
Содержание слайда: Herbarium Budget in 2015-2016
Contract with a commercial partner:
11,850,000 RUR (ca. 172,360 Euro) for digitisation of 786K specimens (or 15.08 RUR per specimen)
№14 слайд![Extra Funding in -](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img13.jpg)
Содержание слайда: Extra Funding in 2015-2016
Development of the web portal:
2,500,000 RUR (ca. 36,400 Euro)
Additional herbarium facilities (cupboards):
4,800,000 RUR (ca. 69,800 Euro) for the additional space to preserve ca. 192K new specimens
№15 слайд![Digitisation Imaging as the](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img14.jpg)
Содержание слайда: Digitisation:
Imaging as the First Step
Only imaging at 300 dpi TIFF (JPG copy)
Basic metadata from folders (ID, species name, area code)
No label data
Free full online access
№16 слайд![Area Codes from Folders](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img15.jpg)
Содержание слайда: Area Codes from Folders
№17 слайд![Metadata Production](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img16.jpg)
Содержание слайда: Metadata Production
№18 слайд![Barcodes as an Accurate](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img17.jpg)
Содержание слайда: Barcodes as an Accurate Counter
Eastern European collections:
338,940 specimens before barcoding
352,720 specimens after barcoding
13,780 increase (+4.07%)
№19 слайд![Metadata Example](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img18.jpg)
Содержание слайда: Metadata Example
№20 слайд![Current Digitisation Rate ,](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img19.jpg)
Содержание слайда: Current Digitisation Rate
785,844 specimens (77.7%) are scanned and available online including:
708,209 specimens of vascular plants (300 dpi)
4,632 type specimens of vascular plants (600 dpi)
72,997 labels of bryophytes
№21 слайд![Digital Collections Ranking](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img20.jpg)
Содержание слайда: Digital Collections Ranking
№22 слайд![Current Digitisation Coverage](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img21.jpg)
Содержание слайда: Current Digitisation Coverage
№23 слайд![Digitisation Quick Geotagging](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img22.jpg)
Содержание слайда: Digitisation: Quick Geotagging
Country names were used as geotags
756K specimens were geotagged using existing country names from folders
30K specimens were geotagged manually in 2017
№24 слайд![Asian Resources K Specimens](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img23.jpg)
Содержание слайда: Asian Resources: 301K Specimens
Russia 157,200 specimens
Middle Asian countries 94,100
Mongolia 27,300
PR of China 3,940
Vietnam 3,880
Turkey 2,440
India 1,680
Japan 1,620
№25 слайд![Online Access http](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img24.jpg)
Содержание слайда: Online Access
http://plant.depo.msu.ru/ (public access)
Russian / English versions
786K specimens at 300 dpi (JPG)
Automatic linking of the collection names with Catalogue of Life taxonomy
No label data at the moment
No geographical coordinates
№26 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img25.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№27 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img26.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№28 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img27.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№29 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img28.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№30 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img29.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№31 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img30.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№32 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img31.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№33 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img32.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№34 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img33.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№35 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img34.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№36 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img35.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№37 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img36.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№38 слайд![https plant.depo.msu.ru](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img37.jpg)
Содержание слайда: https://plant.depo.msu.ru/
№39 слайд![Digitisation Label Capturing](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img38.jpg)
Содержание слайда: Digitisation:
Label Capturing as the Second Step
45,000 labels will be databased in 2017: Caucasus and the Crimea
Contract with highly trained commercial partner
Single-label specimens only
Original label language (no translation)
24 RUR (0.4 USD) per label
№40 слайд![Digitisation Georeferencing](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img39.jpg)
Содержание слайда: Digitisation:
Georeferencing as the Third Step
3,000 specimens were georeferenced in 2017
A single highly-trained freelancer
N, E coordinates
10 RUR (0.18 USD) per specimen
Gazetteer with standard localities as a result
№41 слайд![PR and Promotion Four](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img40.jpg)
Содержание слайда: PR and Promotion
Four appearances on federal TV
Dozens of communications in news on web portals
Digital Herbarium blog on vk.com
Russian vernacular names (14K) used for indexing
№42 слайд![MW Herbarium by the End of ,](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img41.jpg)
Содержание слайда: MW Herbarium by the End of 2018
1,050,000 physical specimens (60th in the world)
integration of few lesser collections (negotiations are in progress)
930,000 specimens will be imaged (89%)
250,000 specimens will be databased (24%)
10,000 specimens will be georeferenced (1%)
№43 слайд![Thank you for being with me](/documents_6/6f67dbe2e794b640b8d0f004f4925734/img42.jpg)
Содержание слайда: Thank you for being
with me today!
Dr Sci Alexey P. Seregin
botanik.seregin@gmail.com